dev-util/bam: initial import of version 0.4.0

Change-Id: I47700ffab5ccbf16948ddf9a96092b95755325d5
Reviewed-on: https://galileo.mailstation.de/gerrit/6100
Reviewed-by: Jenkins <wk@mailstation.de>
Reviewed-by: Julian Ospald <hasufell@posteo.de>

packages/dev-util/bam/files/bam-0.4.0-Add-Makefile.patch

@@ -0,0 +1,71 @@
+From c74e0bde7033139427bc2812c6ee0f68d6e15962 Mon Sep 17 00:00:00 2001
+From: Julian Ospald <hasufell@posteo.de>
+Date: Thu, 19 May 2016 17:32:16 +0200
+Subject: [PATCH] Add Makefile
+Upstram: pending, https://github.com/matricks/bam/pull/92
+
+This is needed to package bam correctly in linux distributions.
+The current shell script is insufficient and doesn't give enough control.
+---
+ Makefile | 49 +++++++++++++++++++++++++++++++++++++++++++++++++
+ 1 file changed, 49 insertions(+)
+ create mode 100644 Makefile
+
+diff --git a/Makefile b/Makefile
+new file mode 100644
+index 0000000..4eace57
+--- /dev/null
++++ b/Makefile
+@@ -0,0 +1,49 @@
++# install directories
++INSTALL_PREFIX = /usr
++INSTALL_BINDIR = $(INSTALL_PREFIX)/bin
++
++
++# toolchain
++PKG_CONFIG ?= pkg-config
++PYTHON ?= python
++
++
++# flags
++LUA_LIBS := $(shell $(PKG_CONFIG) --libs lua 2>/dev/null || echo "-llua")
++LIBS += -lm -lpthread $(LUA_LIBS) -ldl
++LUA_CFLAGS := $(shell $(PKG_CONFIG) --cflags lua 2>/dev/null || echo "-I/usr/include/lua")
++CFLAGS += $(LUA_CFLAGS)
++
++
++# objects
++TARGETS = txt2c internal_base bam
++BAM_OBJ = $(patsubst %.c,%.o,$(wildcard src/*.c))
++TXT2C_LUA = $(wildcard src/*.lua)
++
++
++# make rules
++all: $(TARGETS)
++
++txt2c: src/tools/txt2c
++
++internal_base: src/internal_base.h
++
++src/internal_base.h:
++	src/tools/txt2c $(TXT2C_LUA) > src/internal_base.h
++
++bam: txt2c internal_base $(BAM_OBJ)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(BAM_OBJ) $(LIBS)
++
++test: $(TARGETS)
++	$(PYTHON) scripts/test.py
++
++install: bam
++	install -d "$(DESTDIR)$(INSTALL_BINDIR)"
++	install -m755 bam "$(DESTDIR)$(INSTALL_BINDIR)"/bam
++
++clean:
++	rm -f $(BAM_OBJ) $(TARGETS) src/internal_base.h src/tools/txt2c
++
++
++.PHONY: all test install clean
++
+-- 
+2.8.1
+

packages/dev-util/bam/files/bam-0.4.0-fix-tests.patch

@@ -0,0 +1,23 @@
+From 4b186524ba0b9956147e040a006c9805aec20678 Mon Sep 17 00:00:00 2001
+From: Magnus Auvinen <magnus.auvinen@gmail.com>
+Date: Mon, 2 May 2011 19:18:53 +0200
+Subject: [PATCH] fixed so that test.py exits with errors codes (thanks to
+ debfx)
+
+---
+ scripts/test.py | 2 ++
+ 1 file changed, 2 insertions(+)
+
+diff --git a/scripts/test.py b/scripts/test.py
+index 078e633..90b9b26 100755
+--- a/scripts/test.py
++++ b/scripts/test.py
+@@ -246,6 +246,8 @@ def __init__(self):
+ 	print "FAILED TESTS:"
+ 	for t in failed_tests:
+ 		print "\t"+t
++	sys.exit(1)
+ else:
+ 	print "ALL TESTS PASSED!"
++	sys.exit(0)
+